Additional analyses of liver, blood and kidney tissue pointed to plasmacytoid dendritic cells and type-I interferon signaling as the possible biological links between the genetic variation and kidney injury. The study was led by researchers from Hôpital Universitaire de Bruxelles Université Libre de Bruxelles, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS)–Hospital Clínic de Barcelona and the European Foundation for the Study of Chronic Liver Failure (EF CLIF); with contributions from Centro Nacional de Análisis Genómico (CNAG). The study also drew on the CANONIC, PREDICT, ACLARA, ANRS CO12 CirVir and CIRRAL cohorts and publicly available resources including UK Biobank and the Kidney Precision Medicine Project.
Kidney injury is a frequent, serious complication of decompensated cirrhosis, but individual susceptibility remains poorly understood. While age, sex and liver disease severity influence kidney function, the role of host genetics has been unclear.
To address this, researchers analyzed genetic data from 3220 patients with decompensated cirrhosis across five cohorts, including the CANONIC, PREDICT and ACLARA studies. The findings were then validated in a further 1728 patients with decompensated cirrhosis from four independent cohorts.
The multi-ancestry analysis identified a genome-wide significant risk locus at the SUSD1 gene region that was consistently associated with serum creatinine, a blood marker commonly used to assess kidney function. The findings were replicated across all independent cohorts, with a similar effect observed in patients with European and admixed American genetic ancestries.
The association between SUSD1 and higher creatinine was observed in people with decompensated cirrhosis, but not in those with compensated cirrhosis. In people without cirrhosis, SUSD1 was instead associated with a very small decrease in creatinine. Together, these findings suggest that the effect of the genetic variant depends on the disease context and that its association with renal impairment may be clinically relevant specifically in decompensated cirrhosis.
“What is particularly interesting about this finding is the context specificity of the association. We observed no meaningful association between SUSD1 and renal impairment in the general population or in patients with compensated cirrhosis, while the association was observed in patients with decompensated cirrhosis. This suggests that the effect of this genetic variant may become relevant in the specific context of decompensated cirrhosis, potentially providing new insights into the biological mechanisms underlying renal impairment in this population”, said first author Lukas Otero Sanchez, Postdoctoral Researcher and Resident in Hepatology and Digestive Oncology at Hôpital Universitaire de Bruxelles and Université Libre de Bruxelles, Brussels, Belgium. “The link we observed between SUSD1 expression, plasmacytoid dendritic cells and interferon responses also provides a potential biological pathway that warrants further investigation”, he added.
Patients carrying the risk allele rs2099161[C] presented with higher levels of serum creatinine and were more likely to have kidney failure when they entered the study. The association was strongest among patients carrying two copies of the risk allele: compared with people carrying two copies of the alternative allele, their odds of kidney failure were 60% higher.
The same pattern was observed for kidney failure developing during the first week in the CANONIC cohort. This allele was also associated with a higher likelihood of receiving terlipressin, a treatment used in patients with cirrhosis and kidney failure.
These associations were specific to kidney-related outcomes, with no comparable association with other organ failures, blood pressure, systemic inflammatory markers, mortality or the development of acute-on-chronic liver failure (ACLF).
These findings connect the SUSD1 rs2099161[C] allele not only with a laboratory measure of kidney function, but also with clinically relevant kidney complications.
“The associations with kidney failure and terlipressin use strengthen the link between this genetic finding and clinically important kidney complications. The main value at this stage is the insight it offers into the biology of kidney dysfunction in decompensated cirrhosis. Our results point to an immune pathway that warrants further investigation, but they do not establish that this variant can predict an individual patient’s outcome or determine which treatment they should receive”, said senior author Eric Trépo, Hepatologist and Senior Research Associate at Hôpital Universitaire de Bruxelles and Université Libre de Bruxelles, Brussels, Belgium.
Identifying a genetic association is only the first step. The researchers used several additional approaches to investigate how the genetic finding might affect SUSD1 activity and which biological processes might be involved.
Fine-mapping of the associated region identified a putative functional genetic variant, rs2476934, which is linked to increased SUSD1 expression in blood. This variant is distinct from a previously described regulatory variant affecting SUSD1 under baseline conditions, suggesting that the genetic signal identified in this study may influence SUSD1 expression in a context-dependent manner.
The researchers then combined the genetic results with single-cell and spatial analyses of liver, blood and kidney tissue to identify the cells in which SUSD1 is most active and explore the biological processes associated with kidney dysfunction.
“The single-cell analyses allowed us to move from a genetic association to a plausible cellular mechanism. Across liver, blood and kidney, they consistently pointed to plasmacytoid dendritic cells as a major SUSD1-expressing population, with increased SUSD1 expression and type-I interferon activity in patients with renal impairment. However, these approaches are observational and provide snapshots of complex tissues. They can identify associations and localize biological signals, but they cannot establish whether the SUSD1–pDC–interferon axis directly causes kidney injury. Functional and longitudinal studies will be needed to test this mechanism,” said Juan C. Nieto, Immunologist in the Single Cell Genomics Group at CNAG, Barcelona, Spain.
Across these datasets, plasmacytoid dendritic cells (pDCs), a specialized type of immune cell involved in type-I interferon production, repeatedly emerged as a key cell type. In liver tissue, patients with kidney dysfunction had more evidence of pDCs and stronger activation of type-I interferon-related pathways than those without kidney dysfunction. In blood samples from patients with decompensated cirrhosis, pDCs had the highest proportion of cells expressing SUSD1, while patients with kidney dysfunction had both more SUSD1-positive pDCs and higher SUSD1 expression in these cells.
Analysis of kidney tissue showed a similar pattern. pDCs were prominent among the cells expressing SUSD1, while samples from patients with acute kidney injury showed increased numbers of SUSD1-positive cells and stronger type-I interferon signaling.
“A key lesson from this study is that integrating genetic, single-cell, and spatial transcriptomic data provides a powerful framework for translating statistical associations into plausible biological mechanisms. In the case of SUSD1 and kidney dysfunction in decompensated cirrhosis, each layer of evidence contributes a critical piece of the puzzle, collectively linking genetic susceptibility to specific cellular pathways and tissue-level processes”, said co-first author Joan Clària, Director of the Grifols Chair and Head of Translational Operations at EF CLIF, and Group Leader of the Inflammation and Liver Disease group at IDIBAPS–Hospital Clínic de Barcelona, Barcelona, Spain.
The study identifies a genetic association with renal impairment in patients with decompensated cirrhosis and suggests a possible role for an immune pathway. These findings may help researchers better understand why kidney complications develop in some patients with decompensated cirrhosis. Further studies are needed to determine how SUSD1 variants affect immune-cell function and whether changes in this pathway contribute directly to kidney injury.
“The next steps should address two questions raised by the study. First, how does the progression of cirrhosis affect the association reported here? The fact that the association with kidney failure was not observed among patients with compensated cirrhosis and was even protective among heathy subjects suggest mechanisms reminiscent of antagonistic pleiotropy. The second question is whether the SUSD1–pDC–interferon pathway contributes directly to kidney injury. Elucidating this question should stimulate the discovery of clinically actionable biomarkers for assessing the risk of kidney impairment in patients with decompensated cirrhosis and perhaps result in the identification of novel therapeutic approaches for treating HRS-AKI, which is responsive to terlipressin in only 30%-40% of patients”, said senior author Richard Moreau, Director of EF CLIF.
Other authors in the study are Clélia Galvanin, Ferran Aguilar, Richard Layese, Matteo Serra, Laura Jiménez-Gracia, Paula Nieto, Darko Castven, Sona Frankova, Milan Jirsa, David Tornai, Anna Curto-Vilalta, Alberto Queiroz Farias, Maria Papp, Patricia Momoyo Zitelli, Paolo Caraceni, Giacomo Zaccherini, Luciana L Goncalves, Carlo Alessandria, Gustavo Pereira, Wim Laleman, Adrian C Gadano, Salvatore Piano, Angelo Z Mattos, Desislava Germanova, Valério Lucidi, Daphnée Soret, Line Carolle Ntandja Wandji, Frank Erhard Uschner, Aldo Torre, Victor Vargas, Liliana S C Mendes, Rajeshwar P Mookerjee, Carlos Benitez, Mario R Alvares-da-Silva, Myriam Remmelink, Paulo L Bittencourt, Agustin Albillos, Claudia Alves Couto, Rafael Bañares, Manuel Mendizabal, Delphine Degré, Claudio L Toledo, Martin Janicko, Daniel F Mazo, Mauricio Castillo Barradas, William Bernal, Adelina Zarela Lozano Miranda, P Martín Padilla-Machaca, Alexander Zipprich, René Malé-Velázquez, Christophe Moreno, André Castro Lyra, Flair Carrilho, Javier Fernandez, Jonel Trebicka, Rajiv Jalan, Paolo Angeli, Horia Stefanescu, Pierre-Emmanuel Rautou, Stephan Buch, Alexandre Louvet, Jens U Marquardt, Thierry Gustot, Holger Heyn, Vicente Arroyo, Nathalie Ganne-Carrié, Jan Sperl, Philippe Mathurin, and Pierre Nahon.
Joan Clària is supported by Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III, Spain.
Otero Sanchez L, Clària J, Galvanin C et al. Genetic variants and the risk of renal impairment in decompensated cirrhosis: A multi-ancestry genome-wide association study. Lancet Gastroenterol Hepatol 2026. DOI: 10.1016/S2468-1253(26)00217-7
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